Upload QC results to Portal

A lightweight wrapper around uploadCellMetadata.

Usage

uploadQC(
  object,
  metadata_names = ".qc_result",
  uploaded_name = NULL,
  data_type = "vector",
  quietly = FALSE,
  annotation_type = "cell_quality_classification",
  create_explorer_output = FALSE,
  ...
)

Arguments

object

A SpatialMap object

metadata_names

The name of the metadata column to be uploaded

uploaded_name

Optional - An alternate name for the metadata column to be displayed on the Portal

data_type

Currently only vector is supported for QC results.

quietly

Whether to print output or not

annotation_type

Currently only cell_quality_classification is supported for QC results.

create_explorer_output

Whether to create an explorer or not

...

arguments passed to uploadCellMetadata

Details

See vignette("Tutorial_Annotations_to_Portal") or vignette("AnalysisGuide2_QC_with_SpatialMap") for example workflows that make use of this function.

See also

uploadCellMetadata