plot_proportions

Plot metadata proportions across groups with sample variable. Internal helper for plotCellProportions.

Usage

plot_proportions(
  object,
  var1,
  var2,
  type_setting,
  pos = "stack",
  filter.eval = NULL,
  sort = F,
  var_sample = "Region",
  select_var1 = NULL,
  select_var2 = NULL,
  sample_props = TRUE
)

Arguments

object: SpatialMap or Region object
var1: Variable name from cellMetadata or projectMetadata. Defines groups on the x axis (aes(x = var1) to paraphrase ggplot2 syntax).
var2: Variable name from cellMetadata or projectMetadata. Defines groups that will be indicated by different fill colors (aes(fill = var2) to paraphrase ggplot2 syntax).
pos: (optional) position argument passed to geom_* function. For example, if type=="bar" then pos is passed to geom_bar as geom_bar(..., position = pos).
filter.eval: A quoted character string that will be parsed and evaluated by rlang::parse_expr within a dplyr filter
var_sample: (optional) variable used to demarcate samples for strip charts, violin charts, or box charts(default="Region")
select_var1: Used to select which items from var1 should be included in the graph. (default = NULL, meaning no items excluded from final chart).
select_var2: Same as "select_var1", except for var2.
sample_props: (optional) Whether to plot cell proportions within var_sample (default = TRUE). If TRUE and type=="bar", the mean cell proportions will be plotted. If FALSE, cell counts will be plotted instead.

Usage

Arguments

See also