Subset SpatialMap — smSubset • SpatialMap

Subset using metadata features or cell IDs. The on and keep (or remove) arguments work together - the function will use the cellMetadata column defined in on and the categories defined in keep or remove to filter the object. The cells argument accepts a character vector of cell IDs.

Usage

smSubset(object, on = NULL, keep = NULL, remove = NULL, cells = NULL)

.smsubset(object, on = NULL, keep = NULL, cells = NULL)

Arguments

object: SpatialMap object
on: Which metadata column to search for
keep: Which elements of on arg to keep
remove: Which elements of on arg to remove
cells: A vector of cells to keep

Value

A SpatialMap object