Min Max Scaling
minmax_scale_region.RdPerforms min-max scaling on SpatialMap data, i.e. sets the minimum value to zero and the maximum value to 1.
Options to perform scaling biomarker- or cell-wise with the MARGIN param and to trim outliers before scaling with
the trim param.
Usage
minmax_scale_region(
region,
to = "NormalizedData",
from = "Data",
MARGIN = 1,
trim = c(0.01, 0.99),
na.rm = TRUE
)Arguments
- region
A Region object, or concatenated data generated by .smapply.
- to
Which data slot to assign the normalized data to.
- from
Which data slot to pull data from.
- MARGIN
Whether to apply the function within each biomarker (1) or across all biomarkers in each cell (2).
- trim
Two-element numeric vector describing the extent of outlier trimming that will be performed. For instance,
c(0.01, 0.99), the default, will trim the 1st and 99th percentiles of the data prior to min-max normalization. Trimming is performed biomarker- or cell-wise, following theMARGINparam.- na.rm
Whether to remove NA or not. Defaults to TRUE and may cause problems if FALSE.