Infiltration Score Between Two Phenotypes
infiltrationScore.RdThe infiltration score, or SpatialScore, is defined as the degree to which an infiltrating cell
type interacts with a base, or background cell type. This function computes this score between two groups of
cell types, termed the infil_group or infiltration group, and bg_group or background group. The function
returns a data.frame containing the score.
Usage
infiltrationScore(object, nn, feature, infil_group, bg_group, ...)
infiltrationScore.Region(object, nn, feature, infil_group, bg_group, ...)Arguments
- object
A SpatialMap or Region object
- nn
The name of a Nearest Neighbors object
- feature
The name of a feature, e.g. from
cellMetadata- infil_group
Infiltrating cell types. A character vector that matches elements within
feature.- bg_group
Base cell types. A character vector that matches elements within
feature.- ...
Arguments passed to
.smapply