Methods to extract slots from SpatialMap, Region, and Analysis objects

Getter functions take the object as the first argument and return the desired slot. In some cases, multiple named possibilities are available to extract, in which case a value parameter can be used.

Usage

projectMetadata(x)

# S4 method for SpatialMap
projectMetadata(x)

featureInfo(x)

# S4 method for Region
featureInfo(x)

# S4 method for SpatialMap
featureInfo(x)

features(x)

# S4 method for Region
features(x)

# S4 method for list
features(x)

# S4 method for list
features(x)

# S4 method for Analysis
features(x)

# S4 method for SpatialMap
features(x)

cells(x)

# S4 method for Region
cells(x)

# S4 method for Analysis
cells(x)

# S4 method for SpatialMap
cells(x)

getID(x)

# S4 method for Analysis
getID(x)

channelInfo(x)

# S4 method for Region
channelInfo(x)

bgData(x)

# S4 method for SpatialMap
bgData(x)

# S4 method for Region
bgData(x)

bgFeatures(x)

# S4 method for SpatialMap
bgFeatures(x)

# S4 method for Region
bgFeatures(x)

# S4 method for Analysis
bgFeatures(x)

Arguments

x

A SpatialMap or Region object

Details

Getter methods correspond to data slots in the S4 objects:

• projectMetadata (SpatialMap)

• cells

• features

• activeRegions (SpatialMap)

• activeAnalysis (SpatialMap)

• cellMetadata

• featureInfo

• bgData

• Data-methods

• Regions

• settings

• Representations

• embeddings

• NNs

See also

get_cycle, get_channel, Representations-methods, Data-methods